# Pathway Commons App UI

Pathway Commons App UI is a self-hosted tools & utilities app. App UI is a web interface for searching, visualising, and analysing biological interaction data in Pathway Commons, a large library of genes and proteins, for researchers exploring biological systems. It is open source and self-hosted, installable on Docker Hub.

Canonical page: https://ourlocalhost.com/app/6534/pathway-commons-app-ui

## Description

App UI is a web interface for searching, visualising, and analysing biological interaction data in Pathway Commons, a large library of genes and proteins, for researchers exploring biological systems.

## Platform availability

Available on 0 of 9 platforms.

## Health score

9/100 (Low), based on 3 of 4 factors.
- Maintained: 0 (last commit 1917 days ago)
- Popular: 24 (14 GitHub stars)
- Easy to install: 10 (0 install platforms, Docker image)

## Links

- Docker Hub: https://hub.docker.com/r/pathwaycommons/app-ui
- Official website: https://www.pathwaycommons.org
- GitHub: https://github.com/PathwayCommons/chibe

## Common questions

### What data formats can I download for backup or analysis?

The data can be downloaded per datasource in BioPAX, Simple Interaction Format, and Gene Set Database formats.

### How can I query the interaction data programmatically?

BioPAX Web Services provide search, get, graph, and traverse operations, while SIF Web Services support fast graph-theoretical queries.

### Can I work with the data in Cytoscape?

CyPath2 is a Cytoscape app that lets you search and retrieve pathways from the data with filtering and graph queries.

### Where can I find step-by-step workflow guidance?

A training guide is provided as a pathway analysis online textbook with workflows and primers for concepts.

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Source: Our Local Host (https://ourlocalhost.com/app/6534/pathway-commons-app-ui), the self-hosted and open-source app directory.