# ProteoWizard Skyline

ProteoWizard Skyline is a self-hosted tools & utilities app. A Docker container for running ProteoWizard and Skyline command-line tools with vendor format support on Linux and macOS, where the native vendor binaries are Windows-only. It is open source and self-hosted, installable on Docker Hub.

Canonical page: https://ourlocalhost.com/app/6590/proteowizard-skyline

## Description

A Docker container for running ProteoWizard and Skyline command-line tools with vendor format support on Linux and macOS, where the native vendor binaries are Windows-only.

## Platform availability

Available on 0 of 6 install platforms.

## Links

- Docker Hub: https://hub.docker.com/r/proteowizard/pwiz-skyline-i-agree-to-the-vendor-licenses
- GitHub: https://github.com/ProteoWizard/pwiz

## Common questions

### Does the ProteoWizard Skyline Docker image include vendor-specific code?

Yes, it bundles vendor DLLs, for example Thermo Fisher, under non-Apache licenses.

### Which standard mass spectrometry formats does ProteoWizard support?

It is the reference implementation of the mzML standard mass spectrometry data format and supports mzIdentML 1.1.

### Do I need only the Skyline subtree to build Skyline?

No, Skyline depends on the full ProteoWizard tree, so you should work from a full checkout of the repository.

### Where can I ask technical questions about using the ProteoWizard tools or library?

Use the ProteoWizard support email address or GitHub Issues.

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Source: Our Local Host (https://ourlocalhost.com/app/6590/proteowizard-skyline), the self-hosted and open-source app directory.