ProteoWizard Skyline
A Docker container for running ProteoWizard and Skyline command-line tools with vendor format support on Linux and macOS, where the native vendor binaries are…
Platform availability
Available on 0 of 6 install platforms
- Unraid (not listed)
- TrueNAS (not listed)
- Umbrel (not listed)
- ZimaOS (not listed)
- Proxmox (not listed)
- Helm (not listed)
Also on Docker Hub and GitHub
Health score
Not enough data yet for a health score. It needs at least 2 of 4 factors: maintenance, popularity, ease of install, resource needs.
- GitHub stars
- 322
- Open issues
- 240
- Last commit
- 2026-10-02
- License
- Apache-2.0
- Activity
- declining
Checked today - source: GitHub (ProteoWizard/pwiz)
Resources & Compatibility
ARM (e.g. Raspberry Pi) is not supported.
Checked 5 days ago - source: Docker Hub image tags and published docs
First-install notes
- Vendor License Acknowledgment The image name includes 'i-agree-to-the-vendor-licenses' because it bundles vendor DLLs (e.g. Thermo Fisher) under non-Apache licences; using the image constitutes agreement to those vendor terms. source
Fetched today - each note links to its source
Variants
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Common questions
Does the ProteoWizard Skyline Docker image include vendor-specific code?
Yes, it bundles vendor DLLs, for example Thermo Fisher, under non-Apache licenses.
Which standard mass spectrometry formats does ProteoWizard support?
It is the reference implementation of the mzML standard mass spectrometry data format and supports mzIdentML 1.1.
Do I need only the Skyline subtree to build Skyline?
No, Skyline depends on the full ProteoWizard tree, so you should work from a full checkout of the repository.
Where can I ask technical questions about using the ProteoWizard tools or library?
Use the ProteoWizard support email address or GitHub Issues.
Answers sourced from www.proteowizard.org, github.com, github.com
Community
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